Training material

This repository collects the training materials used during our de.NBI training events, on-site support trainings, and on-line tutorials.

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de.NBI training events

The following table collects the list of de.NBI training events that we organized to introduce data analysis concepts to undergraduates, PhD students, postdocs, and Life Science scholars.

| Date | Location | | :—: | :— | | 2016-10-26 | de.NBI training at EASyM 2016 Berlin | | 2017-03-29 | de.NBI training at CASyM 2017 Ljubljana | | 2017-09-18 | de.NBI training at GMDS 2017 Oldenburg | | 2017-10-04 | de.NBI training at Albert-Ludwigs-Universität Freiburg | | 2018-03-07 | de.NBI training at Christian-Albrechts-Universität Kiel | | 2018-06-27 | de.NBI training at Leibniz-Institut für Alternsforschung (FLI) Jena | | 2018-09-04 | de.NBI training at GMDS 2018 Osnabrück | | 2019-03-06 | de.NBI training at Universität Rostock | | 2019-09-08 | de.NBI training at GMDS 2019 Dortmund | | 2019-10-09 | de.NBI training at Albert-Ludwigs-Universität Freiburg |

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On-site support trainings

The following table collects the list of on-site support training events that we organized to introduce data analysis concepts to undergraduates, PhD students, postdocs, and Life Science scholars.

| Date | Location | | :—: | :— | | 2017-03-20 | On-site support training at Universität Rostock | | 2017-09-29 | On-site support training at Leibniz-Institut für Nutztierbiologie (FBN) Dummerstorf | | 2017-10-10 | On-site support training at Universität Rostock | | 2018-05-21 | On-site support training at Universität Rostock | | 2019-01-07 | On-site support training at Leibniz-Institut für Nutztierbiologie (FBN) Dummerstorf | | 2019-01-08 | On-site support training at Universität Rostock | | 2019-01-29 | On-site support training at Universität Rostock | | 2019-04-04 | On-site support training at Leibniz-Institut für Alternsforschung (FLI) Jena |

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Video tutorials

In the following sections we provide some video tutorials, which we created to illustrate tools and data analysis concept to the participants of our training sessions.

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Gene enrichment analysis with Enrichr

In this tutorial we show the use of Enrichr (Chen et al. 2013, Kuleshov et al. 2016) to carry out the enrichment analysis of a list of differtially expressed genes, which we obtained from the RNA-Seq analysis of two NGS Human breast cancer data sets.

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Running a Galaxy Docker container using Kitematic

In this tutorial we show how to set up your system in order to run the Galaxy RNA workbench (Grüning et al. 2017, Fallmann et al. 2019) as a Docker container, using the Kitematic desktop application.

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